IL_9MTP_040

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9MTP|1|1A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_040 not in the Motif Atlas

Geometric match to IL_9DFE_040

Geometric discrepancy: 0.0641

The information below is about IL_9DFE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9MTP|1|1A|G|1031
9MTP|1|1A|A|1032
9MTP|1|1A|U|1033
9MTP|1|1A|G|1034
*
9MTP|1|1A|C|1121
9MTP|1|1A|G|1122
9MTP|1|1A|C|1123

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1Q

50S ribosomal protein L16