IL_9MTP_071

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

9MTP|1|1A|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_071 not in the Motif Atlas

Geometric match to IL_9DFE_073

Geometric discrepancy: 0.0882

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9MTP|1|1A|G|1846
9MTP|1|1A|A|1847
9MTP|1|1A|A|1848
9MTP|1|1A|G|1849
*
9MTP|1|1A|C|1893
9MTP|1|1A|C|1894

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA