IL_9MTP_074

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_074 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0441

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

9MTP|1|1A|G|1933
9MTP|1|1A|C|1934
*
9MTP|1|1A|G|1964
9MTP|1|1A|C|1965
9MTP|1|1A|A|1966
9MTP|1|1A|C|1967

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1w

Peptide chain release factor 1

Chain 1x

Transfer RNA; tRNA