IL_9MTP_099

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

9MTP|1|1A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_099 not in the Motif Atlas

Geometric match to IL_9DFE_101

Geometric discrepancy: 0.0555

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9MTP|1|1A|U|2636
9MTP|1|1A|U|2637
9MTP|1|1A|G|2638
9MTP|1|1A|A|2639
9MTP|1|1A|G|2640
*
9MTP|1|1A|C|2774
9MTP|1|1A|A|2775
9MTP|1|1A|A|2776
9MTP|1|1A|G|2777
9MTP|1|1A|A|2778
9MTP|1|1A|U|2779
9MTP|1|1A|G|2780
9MTP|1|1A|A|2781
9MTP|1|1A|G|2782

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13