IL_9MTP_101

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

9MTP|1|1A|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_101 not in the Motif Atlas

Geometric match to IL_9DFE_103

Geometric discrepancy: 0.0429

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9MTP|1|1A|C|2680
9MTP|1|1A|C|2681
9MTP|1|1A|U|2682
9MTP|1|1A|C|2683
9MTP|1|1A|U|2684
*
9MTP|1|1A|A|2725
9MTP|1|1A|U|2726
9MTP|1|1A|G|2727

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19