IL_9MTP_176

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

9MTP|1|2A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_176 not in the Motif Atlas

Geometric match to IL_9DFE_004

Geometric discrepancy: 0.0879

The information below is about IL_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9MTP|1|2A|G|81
9MTP|1|2A|G|82
9MTP|1|2A|G|83
9MTP|1|2A|A|84
9MTP|1|2A|G|85
*
9MTP|1|2A|C|97
9MTP|1|2A|G|98
9MTP|1|2A|U|99
9MTP|1|2A|G|100
9MTP|1|2A|G|102
9MTP|1|2A|A|103
9MTP|1|2A|U|104
9MTP|1|2A|C|105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2Y

50S ribosomal protein L24