IL_9MTP_215

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9MTP|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_215 not in the Motif Atlas

Geometric match to IL_9DFE_046

Geometric discrepancy: 0.0706

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9MTP|1|2A|C|1208
9MTP|1|2A|G|1209
9MTP|1|2A|A|1210
9MTP|1|2A|U|1211
9MTP|1|2A|G|1212
9MTP|1|2A|A|1213
9MTP|1|2A|A|1214
9MTP|1|2A|G|1215
*
9MTP|1|2A|U|1234
9MTP|1|2A|G|1235
9MTP|1|2A|G|1236
9MTP|1|2A|A|1237
9MTP|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20