IL_9MTP_217

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_217 not in the Motif Atlas

Geometric match to IL_9DFE_048

Geometric discrepancy: 0.0379

The information below is about IL_9DFE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9MTP|1|2A|A|1262
9MTP|1|2A|U|1263
9MTP|1|2A|G|1264
9MTP|1|2A|A|1265
9MTP|1|2A|G|1266
9MTP|1|2A|U|1267
9MTP|1|2A|A|1268
9MTP|1|2A|A|1269
*
9MTP|1|2A|U|2011
9MTP|1|2A|G|2012
9MTP|1|2A|A|2013
9MTP|1|2A|A|2014
9MTP|1|2A|A|2015
9MTP|1|2A|U|2016
9MTP|1|2A|U|2017

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22