IL_9MTP_273

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

9MTP|1|2A|U|2689, 9MTP|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_273 not in the Motif Atlas

Geometric match to IL_9DFE_104

Geometric discrepancy: 0.0717

The information below is about IL_9DFE_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9MTP|1|2A|U|2687
9MTP|1|2A|U|2688
9MTP|1|2A|U|2689
9MTP|1|2A|C|2690
9MTP|1|2A|C|2691
*
9MTP|1|2A|G|2718
9MTP|1|2A|G|2719
9MTP|1|2A|U|2720
9MTP|1|2A|A|2721
9MTP|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19