IL_9MTP_331

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UACAAAG*CAAAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_331 not in the Motif Atlas

Geometric match to IL_4LFB_051

Geometric discrepancy: 0.1329

The information below is about IL_4LFB_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

9MTP|1|2a|U|1247
9MTP|1|2a|A|1248
9MTP|1|2a|C|1249
9MTP|1|2a|A|1250
9MTP|1|2a|A|1251
9MTP|1|2a|A|1252
9MTP|1|2a|G|1253
*
9MTP|1|2a|C|1284
9MTP|1|2a|A|1285
9MTP|1|2a|A|1286
9MTP|1|2a|A|1287
9MTP|1|2a|A|1288
9MTP|1|2a|A|1289
9MTP|1|2a|G|1290

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z

Chain 2u

30S ribosomal protein Thx