IL_9MTP_332

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

9MTP|1|2a|A|1256, 9MTP|1|2a|U|1257, 9MTP|1|2a|U|1278, 9MTP|1|2a|A|1280, 9MTP|1|2a|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_332 not in the Motif Atlas

Geometric match to IL_4LFB_052

Geometric discrepancy: 0.2599

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9MTP|1|2a|G|1255
9MTP|1|2a|A|1256
9MTP|1|2a|U|1257
9MTP|1|2a|G|1258
*
9MTP|1|2a|C|1277
9MTP|1|2a|U|1278
9MTP|1|2a|A|1279
9MTP|1|2a|A|1280
9MTP|1|2a|U|1281
9MTP|1|2a|C|1282

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z