IL_9MTP_343
3D structure
- PDB id
- 9MTP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 9MTP|1|2a|G|1442|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MTP_343 not in the Motif Atlas
- Geometric match to IL_5UNE_002
- Geometric discrepancy: 0.317
- The information below is about IL_5UNE_002
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9MTP|1|2a|C|1440
9MTP|1|2a|G|1441
9MTP|1|2a|G|1442
9MTP|1|2a|G|1442|||A
9MTP|1|2a|A|1442|||B
9MTP|1|2a|G|1443
*
9MTP|1|2a|C|1459
9MTP|1|2a|A|1460
9MTP|1|2a|G|1461
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2T
- 50S ribosomal protein L19
- Chain 2t
- 30S ribosomal protein S20
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