IL_9MTQ_067

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9MTQ|1|1A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_067 not in the Motif Atlas

Geometric match to IL_9DFE_068

Geometric discrepancy: 0.0421

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9MTQ|1|1A|C|1686
9MTQ|1|1A|G|1687
9MTQ|1|1A|U|1688
9MTQ|1|1A|A|1689
9MTQ|1|1A|A|1690
9MTQ|1|1A|C|1691
*
9MTQ|1|1A|G|1696
9MTQ|1|1A|G|1697
9MTQ|1|1A|A|1698
9MTQ|1|1A|G|1699
9MTQ|1|1A|A|1700
9MTQ|1|1A|A|1701
9MTQ|1|1A|G|1702

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA