IL_9MTQ_084

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_084 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3871

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9MTQ|1|1A|G|2124
9MTQ|1|1A|G|2125
9MTQ|1|1A|A|2126
9MTQ|1|1A|G|2127
*
9MTQ|1|1A|C|2161
9MTQ|1|1A|G|2162
9MTQ|1|1A|C|2163
9MTQ|1|1A|C|2164
9MTQ|1|1A|G|2165
9MTQ|1|1A|G|2166
9MTQ|1|1A|U|2167
9MTQ|1|1A|G|2168
9MTQ|1|1A|A|2169
9MTQ|1|1A|A|2170
9MTQ|1|1A|A|2171
9MTQ|1|1A|U|2172
9MTQ|1|1A|A|2173
9MTQ|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains