IL_9MTQ_102

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

9MTQ|1|1A|U|2689, 9MTQ|1|1A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_102 not in the Motif Atlas

Geometric match to IL_9DFE_104

Geometric discrepancy: 0.0466

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9MTQ|1|1A|U|2687
9MTQ|1|1A|U|2688
9MTQ|1|1A|U|2689
9MTQ|1|1A|C|2690
9MTQ|1|1A|C|2691
*
9MTQ|1|1A|G|2718
9MTQ|1|1A|G|2719
9MTQ|1|1A|U|2720
9MTQ|1|1A|A|2721
9MTQ|1|1A|G|2722

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19