3D structure

PDB id
9MTQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UUUCC*GGUAG
Length
10 nucleotides
Bulged bases
9MTQ|1|1A|U|2689, 9MTQ|1|1A|C|2690
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTQ_102 not in the Motif Atlas
Geometric match to IL_9DFE_104
Geometric discrepancy: 0.0466
The information below is about IL_9DFE_104
Detailed Annotation
UAA/GAN related, with intercalation
Broad Annotation
UAA/GAN related, with intercalation
Motif group
IL_82016.1
Basepair signature
cWW-L-tHS-L-cWW
Number of instances in this motif group
4

Unit IDs

9MTQ|1|1A|U|2687
9MTQ|1|1A|U|2688
9MTQ|1|1A|U|2689
9MTQ|1|1A|C|2690
9MTQ|1|1A|C|2691
*
9MTQ|1|1A|G|2718
9MTQ|1|1A|G|2719
9MTQ|1|1A|U|2720
9MTQ|1|1A|A|2721
9MTQ|1|1A|G|2722

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1R
50S ribosomal protein L17
Chain 1T
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3913 s
Application loaded.