3D structure

PDB id
9MTQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
9MTQ|1|1a|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTQ_134 not in the Motif Atlas
Geometric match to IL_4LFB_022
Geometric discrepancy: 0.0679
The information below is about IL_4LFB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_20847.1
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
5

Unit IDs

9MTQ|1|1a|C|569
9MTQ|1|1a|G|570
9MTQ|1|1a|U|571
9MTQ|1|1a|A|572
9MTQ|1|1a|A|573
9MTQ|1|1a|A|574
9MTQ|1|1a|G|575
*
9MTQ|1|1a|C|880
9MTQ|1|1a|G|881

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1e
30S ribosomal protein S5
Chain 1h
30S ribosomal protein S8
Chain 1l
30S ribosomal protein S12
Chain 1q
30S ribosomal protein S17

Coloring options:


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