IL_9MTQ_251

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9MTQ|1|2A|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_251 not in the Motif Atlas

Geometric match to IL_9DFE_081

Geometric discrepancy: 0.0681

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9MTQ|1|2A|G|2070
9MTQ|1|2A|A|2071
*
9MTQ|1|2A|U|2438
9MTQ|1|2A|A|2439
9MTQ|1|2A|C|2440
9MTQ|1|2A|C|2441

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2x

Transfer RNA; tRNA

Chain 2z

P-site Peptidyl-tRNA fMEAAAKC-tRNAcys Peptide-part