IL_9MTQ_295

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

9MTQ|1|2a|U|244, 9MTQ|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_295 not in the Motif Atlas

Geometric match to IL_4LFB_011

Geometric discrepancy: 0.0822

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9MTQ|1|2a|C|242
9MTQ|1|2a|A|243
9MTQ|1|2a|U|244
9MTQ|1|2a|C|245
9MTQ|1|2a|A|246
9MTQ|1|2a|G|247
*
9MTQ|1|2a|C|277
9MTQ|1|2a|G|278
9MTQ|1|2a|A|279
9MTQ|1|2a|C|280
9MTQ|1|2a|G|281
9MTQ|1|2a|A|282
9MTQ|1|2a|C|283
9MTQ|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17