IL_9MTQ_315

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

9MTQ|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_315 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.0935

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

9MTQ|1|2a|G|683
9MTQ|1|2a|A|684
9MTQ|1|2a|G|685
9MTQ|1|2a|U|686
9MTQ|1|2a|A|687
9MTQ|1|2a|G|688
*
9MTQ|1|2a|C|699
9MTQ|1|2a|G|700
9MTQ|1|2a|C|701
9MTQ|1|2a|A|702
9MTQ|1|2a|G|703
9MTQ|1|2a|A|704
9MTQ|1|2a|U|705
9MTQ|1|2a|A|706
9MTQ|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11