IL_9MTQ_345

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

9MTQ|1|2a|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTQ_345 not in the Motif Atlas

Geometric match to IL_5UNE_002

Geometric discrepancy: 0.3057

The information below is about IL_5UNE_002

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9MTQ|1|2a|C|1440
9MTQ|1|2a|G|1441
9MTQ|1|2a|G|1442
9MTQ|1|2a|G|1442|||A
9MTQ|1|2a|A|1442|||B
9MTQ|1|2a|G|1443
*
9MTQ|1|2a|C|1459
9MTQ|1|2a|A|1460
9MTQ|1|2a|G|1461

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20