IL_9MTR_046
3D structure
- PDB id
- 9MTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MTR_046 not in the Motif Atlas
- Geometric match to IL_9DFE_048
- Geometric discrepancy: 0.0441
- The information below is about IL_9DFE_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9MTR|1|1A|A|1262
9MTR|1|1A|U|1263
9MTR|1|1A|G|1264
9MTR|1|1A|A|1265
9MTR|1|1A|G|1266
9MTR|1|1A|U|1267
9MTR|1|1A|A|1268
9MTR|1|1A|A|1269
*
9MTR|1|1A|U|2011
9MTR|1|1A|G|2012
9MTR|1|1A|A|2013
9MTR|1|1A|A|2014
9MTR|1|1A|A|2015
9MTR|1|1A|U|2016
9MTR|1|1A|U|2017
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1F
- 50S ribosomal protein L4
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
Coloring options: