IL_9MTR_140

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTR_140 not in the Motif Atlas

Geometric match to IL_4LFB_028

Geometric discrepancy: 0.1236

The information below is about IL_4LFB_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

9MTR|1|1a|G|657
9MTR|1|1a|G|658
*
9MTR|1|1a|C|747
9MTR|1|1a|C|748
9MTR|1|1a|C|749

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1o

30S ribosomal protein S15