3D structure

PDB id
9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UGUAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTS_026 not in the Motif Atlas
Geometric match to IL_9DFE_026
Geometric discrepancy: 0.0645
The information below is about IL_9DFE_026
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

9MTS|1|1A|U|858
9MTS|1|1A|G|859
9MTS|1|1A|U|860
9MTS|1|1A|A|861
9MTS|1|1A|G|862
*
9MTS|1|1A|C|915
9MTS|1|1A|G|916
9MTS|1|1A|A|917
9MTS|1|1A|A|918
9MTS|1|1A|G|919

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 1B
5S ribosomal RNA; 5S rRNA
Chain 1Q
50S ribosomal protein L16
Chain 1Z
50S ribosomal protein L25

Coloring options:


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