IL_9MTS_100

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

9MTS|1|1A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_100 not in the Motif Atlas

Geometric match to IL_9DFE_101

Geometric discrepancy: 0.068

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9MTS|1|1A|U|2636
9MTS|1|1A|U|2637
9MTS|1|1A|G|2638
9MTS|1|1A|A|2639
9MTS|1|1A|G|2640
*
9MTS|1|1A|C|2774
9MTS|1|1A|A|2775
9MTS|1|1A|A|2776
9MTS|1|1A|G|2777
9MTS|1|1A|A|2778
9MTS|1|1A|U|2779
9MTS|1|1A|G|2780
9MTS|1|1A|A|2781
9MTS|1|1A|G|2782

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13