3D structure

PDB id
9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
9MTS|1|1a|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTS_144 not in the Motif Atlas
Geometric match to IL_4LFB_031
Geometric discrepancy: 0.0754
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

9MTS|1|1a|G|683
9MTS|1|1a|A|684
9MTS|1|1a|G|685
9MTS|1|1a|U|686
9MTS|1|1a|A|687
9MTS|1|1a|G|688
*
9MTS|1|1a|C|699
9MTS|1|1a|G|700
9MTS|1|1a|C|701
9MTS|1|1a|A|702
9MTS|1|1a|G|703
9MTS|1|1a|A|704
9MTS|1|1a|U|705
9MTS|1|1a|A|706
9MTS|1|1a|C|707

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1k
30S ribosomal protein S11

Coloring options:


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