IL_9MTS_273

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_273 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0827

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9MTS|1|2A|C|2652
9MTS|1|2A|U|2653
9MTS|1|2A|A|2654
9MTS|1|2A|G|2655
9MTS|1|2A|U|2656
9MTS|1|2A|A|2657
9MTS|1|2A|C|2658
*
9MTS|1|2A|G|2663
9MTS|1|2A|G|2664
9MTS|1|2A|A|2665
9MTS|1|2A|C|2666
9MTS|1|2A|C|2667
9MTS|1|2A|G|2668

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6