IL_9MTS_334

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

9MTS|1|2a|A|1256, 9MTS|1|2a|U|1257, 9MTS|1|2a|U|1278, 9MTS|1|2a|A|1280, 9MTS|1|2a|U|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_334 not in the Motif Atlas

Geometric match to IL_4LFB_052

Geometric discrepancy: 0.2789

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9MTS|1|2a|G|1255
9MTS|1|2a|A|1256
9MTS|1|2a|U|1257
9MTS|1|2a|G|1258
*
9MTS|1|2a|C|1277
9MTS|1|2a|U|1278
9MTS|1|2a|A|1279
9MTS|1|2a|A|1280
9MTS|1|2a|U|1281
9MTS|1|2a|C|1282

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z