IL_9MTT_047

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTT_047 not in the Motif Atlas

Geometric match to IL_9DFE_048

Geometric discrepancy: 0.0496

The information below is about IL_9DFE_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9MTT|1|1A|A|1262
9MTT|1|1A|U|1263
9MTT|1|1A|G|1264
9MTT|1|1A|A|1265
9MTT|1|1A|G|1266
9MTT|1|1A|U|1267
9MTT|1|1A|A|1268
9MTT|1|1A|A|1269
*
9MTT|1|1A|U|2011
9MTT|1|1A|G|2012
9MTT|1|1A|A|2013
9MTT|1|1A|A|2014
9MTT|1|1A|A|2015
9MTT|1|1A|U|2016
9MTT|1|1A|U|2017

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1F

50S ribosomal protein L4

Chain 1W

50S ribosomal protein L22