IL_9MTT_198

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

9MTT|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTT_198 not in the Motif Atlas

Geometric match to IL_9DFE_024

Geometric discrepancy: 0.0781

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9MTT|1|2A|C|844
9MTT|1|2A|G|845
9MTT|1|2A|C|846
9MTT|1|2A|U|847
9MTT|1|2A|G|848
9MTT|1|2A|A|849
9MTT|1|2A|C|850
*
9MTT|1|2A|G|927
9MTT|1|2A|G|928
9MTT|1|2A|U|930
9MTT|1|2A|G|931
9MTT|1|2A|G|932
9MTT|1|2A|A|933
9MTT|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30