3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CAU*AG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_004 not in the Motif Atlas
Homologous match to IL_4LFB_004
Geometric discrepancy: 0.0725
The information below is about IL_4LFB_004
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

9N2B|1|16|C|54
9N2B|1|16|A|55
9N2B|1|16|U|56
*
9N2B|1|16|A|356
9N2B|1|16|G|357

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

No other chains within 10Å

Coloring options:


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