IL_9N2B_006
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGG*CGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_006 not in the Motif Atlas
- Homologous match to IL_5J7L_006
- Geometric discrepancy: 0.114
- The information below is about IL_5J7L_006
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9N2B|1|16|C|67
9N2B|1|16|G|68
9N2B|1|16|G|69
*
9N2B|1|16|C|99
9N2B|1|16|G|100
9N2B|1|16|A|101
9N2B|1|16|G|102
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain ST
- 30S ribosomal protein S20
Coloring options: