IL_9N2B_009
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAA*UGC
- Length
- 7 nucleotides
- Bulged bases
- 9N2B|1|16|A|130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_009 not in the Motif Atlas
- Homologous match to IL_5J7L_009
- Geometric discrepancy: 0.0826
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9N2B|1|16|G|128
9N2B|1|16|A|129
9N2B|1|16|A|130
9N2B|1|16|A|131
*
9N2B|1|16|U|231
9N2B|1|16|G|232
9N2B|1|16|C|233
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SP
- 30S ribosomal protein S16
- Chain SQ
- 30S ribosomal protein S17
- Chain ST
- 30S ribosomal protein S20
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