3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAA*UGC
Length
7 nucleotides
Bulged bases
9N2B|1|16|A|130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_009 not in the Motif Atlas
Homologous match to IL_5J7L_009
Geometric discrepancy: 0.0826
The information below is about IL_5J7L_009
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

9N2B|1|16|G|128
9N2B|1|16|A|129
9N2B|1|16|A|130
9N2B|1|16|A|131
*
9N2B|1|16|U|231
9N2B|1|16|G|232
9N2B|1|16|C|233

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SP
30S ribosomal protein S16
Chain SQ
30S ribosomal protein S17
Chain ST
30S ribosomal protein S20

Coloring options:


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