IL_9N2B_012

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9N2B|1|16|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1105

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9N2B|1|16|G|147
9N2B|1|16|G|148
9N2B|1|16|A|149
9N2B|1|16|U|150
9N2B|1|16|A|151
9N2B|1|16|A|152
9N2B|1|16|C|153
*
9N2B|1|16|G|168
9N2B|1|16|C|169
9N2B|1|16|U|170
9N2B|1|16|A|171
9N2B|1|16|A|172
9N2B|1|16|U|173
9N2B|1|16|A|174
9N2B|1|16|C|175

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain ST

30S ribosomal protein S20