IL_9N2B_023

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0845

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9N2B|1|16|G|450
9N2B|1|16|A|451
9N2B|1|16|A|452
9N2B|1|16|G|453
9N2B|1|16|G|454
9N2B|1|16|G|455
*
9N2B|1|16|C|477
9N2B|1|16|A|478
9N2B|1|16|U|479
9N2B|1|16|U|480
9N2B|1|16|G|481
9N2B|1|16|A|482
9N2B|1|16|C|483

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SP

30S ribosomal protein S16