IL_9N2B_025
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9N2B|1|16|A|532, 9N2B|1|16|U|534, 9N2B|1|16|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_025 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1772
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9N2B|1|16|G|515
9N2B|1|16|PSU|516
9N2B|1|16|G|517
9N2B|1|16|C|518
9N2B|1|16|C|519
9N2B|1|16|A|520
9N2B|1|16|G|521
*
9N2B|1|16|C|528
9N2B|1|16|G|529
9N2B|1|16|G|530
9N2B|1|16|U|531
9N2B|1|16|A|532
9N2B|1|16|A|533
9N2B|1|16|U|534
9N2B|1|16|A|535
9N2B|1|16|C|536
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SC
- 30S ribosomal protein S3
- Chain SD
- 30S ribosomal protein S4
- Chain SL
- Small ribosomal subunit protein uS12
- Chain mR
- Synthetic messenger RNA (mRNA) 60 bp in length
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