3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
9N2B|1|16|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_033 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.0433
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

9N2B|1|16|U|662
9N2B|1|16|A|663
9N2B|1|16|G|664
9N2B|1|16|A|665
9N2B|1|16|G|666
*
9N2B|1|16|U|740
9N2B|1|16|G|741
9N2B|1|16|G|742
9N2B|1|16|A|743

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SF
30S ribosomal protein S6
Chain SO
30S ribosomal protein S15
Chain SR
30S ribosomal protein S18

Coloring options:


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