IL_9N2B_038

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0782

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9N2B|1|16|G|887
9N2B|1|16|G|888
9N2B|1|16|A|889
9N2B|1|16|G|890
9N2B|1|16|U|891
9N2B|1|16|A|892
9N2B|1|16|C|893
9N2B|1|16|G|894
*
9N2B|1|16|U|905
9N2B|1|16|A|906
9N2B|1|16|A|907
9N2B|1|16|A|908
9N2B|1|16|A|909
9N2B|1|16|C|910

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain SL

Small ribosomal subunit protein uS12