IL_9N2B_066

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_066 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1385

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9N2B|1|16|U|1537
9N2B|1|16|C|1538
9N2B|1|16|C|1539
*
9N2B|1|mR|G|25
9N2B|1|mR|A|26
9N2B|1|mR|G|27

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Chain mR

Synthetic messenger RNA (mRNA) 60 bp in length

Nearby chains

Chain SR

30S ribosomal protein S18

Chain SU

30S ribosomal protein S21