IL_9N2B_073

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_073 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0723

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9N2B|1|23|C|239
9N2B|1|23|C|240
9N2B|1|23|A|241
9N2B|1|23|G|242
9N2B|1|23|U|243
9N2B|1|23|A|244
9N2B|1|23|G|245
*
9N2B|1|23|C|253
9N2B|1|23|G|254
9N2B|1|23|A|255
9N2B|1|23|A|256
9N2B|1|23|C|257
9N2B|1|23|G|258

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LO

50S ribosomal protein L15

Chain Li

50S ribosomal protein L35