IL_9N2B_087
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9N2B|1|23|G|776, 9N2B|1|23|A|788, 9N2B|1|23|A|789, 9N2B|1|23|U|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9N2B_087 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0933
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9N2B|1|23|G|775
9N2B|1|23|G|776
9N2B|1|23|G|777
*
9N2B|1|23|C|787
9N2B|1|23|A|788
9N2B|1|23|A|789
9N2B|1|23|U|790
9N2B|1|23|C|791
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LB
- 50S ribosomal protein L2
- Chain LD
- Large ribosomal subunit protein uL4
- Chain LV
- Large ribosomal subunit protein uL22
- Chain Lh
- 50S ribosomal protein L34
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