3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_092 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.06
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9N2B|1|23|G|856
9N2B|1|23|G|857
9N2B|1|23|G|858
9N2B|1|23|G|859
9N2B|1|23|U|860
9N2B|1|23|A|861
9N2B|1|23|G|862
*
9N2B|1|23|C|915
9N2B|1|23|G|916
9N2B|1|23|A|917
9N2B|1|23|A|918
9N2B|1|23|U|919
9N2B|1|23|A|920
9N2B|1|23|C|921

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 5
5S ribosomal RNA; 5S rRNA
Chain LP
50S ribosomal protein L16
Chain La
50S ribosomal protein L27
Chain Ld
50S ribosomal protein L30

Coloring options:


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