IL_9N2B_099

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9N2B|1|23|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_099 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0488

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9N2B|1|23|C|998
9N2B|1|23|U|999
9N2B|1|23|A|1000
9N2B|1|23|A|1001
9N2B|1|23|G|1002
*
9N2B|1|23|C|1153
9N2B|1|23|G|1154
9N2B|1|23|A|1155
9N2B|1|23|A|1156
9N2B|1|23|G|1157

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain LT

50S ribosomal protein L20

Chain LU

50S ribosomal protein L21

Chain Ld

50S ribosomal protein L30