IL_9N2B_100

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_100 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.0635

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9N2B|1|23|U|1004
9N2B|1|23|C|1005
9N2B|1|23|C|1006
9N2B|1|23|C|1007
9N2B|1|23|A|1008
9N2B|1|23|A|1009
9N2B|1|23|A|1010
9N2B|1|23|G|1011
*
9N2B|1|23|C|1150
9N2B|1|23|A|1151

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LM

50S ribosomal protein L13

Chain LT

50S ribosomal protein L20