3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAAG*CGGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_105 not in the Motif Atlas
Homologous match to IL_5J7L_283
Geometric discrepancy: 0.1212
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

9N2B|1|23|G|1038
9N2B|1|23|A|1039
9N2B|1|23|A|1040
9N2B|1|23|G|1041
*
9N2B|1|23|C|1114
9N2B|1|23|G|1115
9N2B|1|23|G|1116
9N2B|1|23|C|1117

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LF
50S ribosomal protein L6
Chain LP
50S ribosomal protein L16
Chain LY
50S ribosomal protein L25
Chain Lj
50S ribosomal protein L36

Coloring options:


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