IL_9N2B_108

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9N2B|1|23|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0735

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9N2B|1|23|C|1208
9N2B|1|23|U|1209
9N2B|1|23|G|1210
9N2B|1|23|C|1211
9N2B|1|23|G|1212
9N2B|1|23|A|1213
9N2B|1|23|A|1214
9N2B|1|23|G|1215
*
9N2B|1|23|U|1234
9N2B|1|23|G|1235
9N2B|1|23|G|1236
9N2B|1|23|A|1237
9N2B|1|23|G|1238

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LT

50S ribosomal protein L20