IL_9N2B_111

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9N2B|1|23|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_111 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1015

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9N2B|1|23|C|1319
9N2B|1|23|C|1320
9N2B|1|23|A|1321
9N2B|1|23|A|1322
9N2B|1|23|C|1323
*
9N2B|1|23|G|1331
9N2B|1|23|G|1332
9N2B|1|23|G|1333

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LV

Large ribosomal subunit protein uL22

Chain LW

50S ribosomal protein L23