IL_9N2B_112

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_112 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0609

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9N2B|1|23|C|1351
9N2B|1|23|U|1352
9N2B|1|23|A|1353
9N2B|1|23|A|1354
9N2B|1|23|G|1355
*
9N2B|1|23|C|1376
9N2B|1|23|G|1377
9N2B|1|23|A|1378
9N2B|1|23|U|1379
9N2B|1|23|G|1380

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB

50S ribosomal protein L2

Chain Lh

50S ribosomal protein L34