IL_9N2B_119

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9N2B|1|23|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_119 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2596

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9N2B|1|23|U|1468
9N2B|1|23|A|1469
9N2B|1|23|A|1470
9N2B|1|23|G|1471
*
9N2B|1|23|U|1520
9N2B|1|23|G|1521
9N2B|1|23|A|1522
9N2B|1|23|U|1523
9N2B|1|23|G|1524

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains