IL_9N2B_120

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_120 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.0768

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9N2B|1|23|U|1474
9N2B|1|23|G|1475
9N2B|1|23|U|1476
9N2B|1|23|A|1477
9N2B|1|23|G|1478
*
9N2B|1|23|U|1513
9N2B|1|23|G|1514
9N2B|1|23|A|1515
9N2B|1|23|G|1516
9N2B|1|23|G|1517

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains