IL_9N2B_125

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9N2B_125 not in the Motif Atlas

Homologous match to IL_5J7L_305

Geometric discrepancy: 0.0918

The information below is about IL_5J7L_305

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_67095.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

9N2B|1|23|G|1663
9N2B|1|23|A|1664
9N2B|1|23|A|1665
*
9N2B|1|23|U|1995
9N2B|1|23|C|1996
9N2B|1|23|C|1997

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14

Chain LS

50S ribosomal protein L19